PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g02000.1
Common NameLR48_Vigan09g220700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 326aa    MW: 35956.6 Da    PI: 6.3418
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g02000.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.43.2e-174896355
             AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    + GVr+++ +gr++AeIr p +   + r++lg+f+taeeAa a+++a+++++g
  Vang03g02000.1 48 FLGVRRRP-WGRYAAEIRNPLT---KERHWLGTFDTAEEAALAYDRAALSMKG 96
                    56******.**********743...4************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.52147104IPR001471AP2/ERF domain
CDDcd000183.52E-2847103No hitNo description
SMARTSM003807.2E-3147110IPR001471AP2/ERF domain
PRINTSPR003674.5E-84859IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-2048105IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-2748104IPR001471AP2/ERF domain
PfamPF008472.9E-115096IPR001471AP2/ERF domain
PRINTSPR003674.5E-87086IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010102Biological Processlateral root morphogenesis
GO:0010432Biological Processbract development
GO:0010451Biological Processfloral meristem growth
GO:0010582Biological Processfloral meristem determinacy
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MSTSRTSDVS LKGYQSKPTQ MNLSLLQRNA STSGERRGRG KQAEPGRFLG VRRRPWGRYA  60
AEIRNPLTKE RHWLGTFDTA EEAALAYDRA ALSMKGCQAR TNFVYSKDTN IFHNALTPFN  120
SQPLLPPSHN THNNMQLTNQ TTLSHLPTFT SHVENPSSDL YADSETAFGS PQDDNFFFST  180
QSNSGYLECI VPGNCFKKSN ASASGRDLEV GHVNSNSMQI QPHFDTTQEA FNMQATVAPD  240
YADFSCPTDL GKGLWDNHQS WDCSSNELAA MFKNPSRVVE EGCMDALHPF TDSSNYELIT  300
QVVSSTTYSP SVPPFGNVGS AYSPF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-1848103359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00520DAPTransfer from AT5G18560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014517436.10.0PREDICTED: ethylene-responsive transcription factor LEP-like
SwissprotQ6J9Q29e-54ERF86_ARATH; Ethylene-responsive transcription factor ERF086
TrEMBLA0A0L9VEX20.0A0A0L9VEX2_PHAAN; Uncharacterized protein
STRINGGLYMA13G28810.21e-176(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57843351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18560.12e-44ERF family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]